Variant report

Variant	rs2024773
Chromosome Location	chr1:76027657-76027658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:76027597..76030890-chr1:76036483..76038711,3	K562	blood:
2	chr1:76026343..76028341-chr1:76031572..76034136,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10493575	1.00[JPT][hapmap]
rs11578532	1.00[JPT][hapmap];0.83[YRI][hapmap]
rs12057382	1.00[CHB][hapmap]
rs12401888	1.00[JPT][hapmap]
rs12401896	1.00[JPT][hapmap]
rs12405357	1.00[JPT][hapmap]
rs12408190	1.00[JPT][hapmap]
rs12410333	1.00[JPT][hapmap]
rs12411159	1.00[JPT][hapmap]
rs1443845	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs17303788	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs17584320	1.00[JPT][hapmap]
rs17644957	1.00[JPT][hapmap]
rs184159	1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1857353	1.00[JPT][hapmap]
rs1857354	1.00[JPT][hapmap]
rs190024	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs190026	1.00[CHB][hapmap]
rs1913118	1.00[JPT][hapmap]
rs1930320	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1936359	1.00[JPT][hapmap]
rs2040079	1.00[JPT][hapmap]
rs2040082	1.00[JPT][hapmap]
rs211686	1.00[CHB][hapmap]
rs211688	1.00[JPT][hapmap];0.83[YRI][hapmap]
rs211698	1.00[CHB][hapmap]
rs211701	1.00[CHB][hapmap]
rs211702	0.82[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs211703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs211706	1.00[CHB][hapmap]
rs211707	1.00[CHB][hapmap]
rs211741	1.00[CHB][hapmap]
rs211744	1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs211747	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs211751	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs211752	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs211760	1.00[CHB][hapmap]
rs211761	1.00[CHB][hapmap]
rs211768	1.00[CHB][hapmap]
rs211771	1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs211772	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs211774	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs211775	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs211776	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs211783	1.00[CHB][hapmap]
rs2779490	1.00[JPT][hapmap];0.83[YRI][hapmap]
rs449394	1.00[JPT][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4540592	1.00[JPT][hapmap]
rs4949855	1.00[JPT][hapmap]
rs6593578	1.00[CHB][hapmap]
rs6662665	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs983331	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519329	chr1:75830438-76358591	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv3445096	chr1:75933216-76126980	Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2757737	chr1:75986904-76187748	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758943	chr1:75986904-76187748	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv830270	chr1:76002220-76033156	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76027600-76028400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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