Variant report

Variant	rs2025011
Chromosome Location	chr14:68756087-68756088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68755054..68757017-chr14:69259379..69262701,3	MCF-7	breast:
2	chr14:68751000..68752773-chr14:68754092..68756821,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12435229	0.96[AFR][1000 genomes]
rs17105332	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105341	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34573256	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3932486	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv428628	chr14:68674504-68835127	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68746000-68758600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr14:68746600-68764600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:68750400-68758400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr14:68750400-68761200	Weak transcription	Pancreas	Pancrea
5	chr14:68750600-68756200	Weak transcription	Small Intestine	intestine
6	chr14:68750600-68758000	Weak transcription	Lung	lung
7	chr14:68750600-68758400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr14:68750600-68758600	Weak transcription	Psoas Muscle	Psoas
9	chr14:68750600-68759600	Weak transcription	Brain Hippocampus Middle	brain
10	chr14:68750800-68756600	Weak transcription	Fetal Intestine Small	intestine
11	chr14:68750800-68758200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr14:68750800-68761800	Weak transcription	Left Ventricle	heart
13	chr14:68751400-68758200	Weak transcription	HepG2	liver
14	chr14:68751600-68756600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:68751800-68758600	Weak transcription	Right Atrium	heart
16	chr14:68752000-68756400	Weak transcription	Fetal Intestine Large	intestine
17	chr14:68752000-68757600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr14:68752200-68759200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr14:68752400-68758000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr14:68752400-68758200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr14:68752400-68758600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:68752400-68761600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:68752400-68765000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:68752400-68768800	Weak transcription	Aorta	Aorta
25	chr14:68752600-68758400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr14:68752600-68758600	Weak transcription	Fetal Stomach	stomach
27	chr14:68752600-68761600	Weak transcription	Spleen	Spleen
28	chr14:68752600-68763800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr14:68752800-68756600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr14:68753000-68756200	Enhancers	GM12878-XiMat	blood
31	chr14:68753000-68758400	Weak transcription	Colon Smooth Muscle	Colon
32	chr14:68753200-68758200	Weak transcription	K562	blood
33	chr14:68753400-68768800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr14:68753600-68758800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr14:68753600-68768600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:68753600-68768800	Weak transcription	Dnd41	blood
37	chr14:68753800-68758600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr14:68754000-68758000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr14:68754000-68758600	Weak transcription	Fetal Thymus	thymus
40	chr14:68754000-68759000	Weak transcription	Thymus	Thymus
41	chr14:68754000-68760200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr14:68754400-68758200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr14:68754600-68758000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr14:68754600-68758400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr14:68755200-68756400	Weak transcription	Primary B cells from peripheral blood	blood
46	chr14:68755200-68758200	Weak transcription	Primary T cells from cord blood	blood
47	chr14:68755200-68758200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr14:68755200-68758200	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr14:68755400-68756600	Weak transcription	Primary B cells from cord blood	blood
50	chr14:68755400-68756600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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