Variant report

Variant	rs2025582
Chromosome Location	chr1:178968318-178968319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1012066	0.94[ASN][1000 genomes]
rs1325194	1.00[LWK][hapmap]
rs2636290	1.00[LWK][hapmap]
rs3818433	1.00[LWK][hapmap]
rs997420	0.90[CHB][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528689	chr1:178950318-178968318	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv441722	chr1:178953746-178976729	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv825509	chr1:178963180-178975836	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2025582	FAM20B	cis	parietal	SCAN
rs2025582	RALGPS2	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:178966800-178969000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:178967000-178971400	Weak transcription	Ovary	ovary
3	chr1:178967600-178971400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:178968000-178968400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:178968000-178968400	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:178968000-178968600	Enhancers	Stomach Smooth Muscle	stomach
7	chr1:178968000-178968800	Enhancers	HepG2	liver
8	chr1:178968200-178968400	Enhancers	Fetal Stomach	stomach
9	chr1:178968200-178968600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:178968200-178969400	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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