Variant report

Variant	rs2026035
Chromosome Location	chr9:108202781-108202782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12335407	0.80[YRI][hapmap];0.82[AFR][1000 genomes]
rs12335414	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35046638	1.00[EUR][1000 genomes]
rs6477442	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs66497257	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7024356	0.93[EUR][1000 genomes]
rs7026355	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73514074	1.00[EUR][1000 genomes]
rs7467335	0.80[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1053973	chr9:108199177-108300186	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108194800-108203800	Weak transcription	Brain Anterior Caudate	brain
2	chr9:108195800-108209800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:108197800-108206800	Weak transcription	HepG2	liver
4	chr9:108199400-108203600	Weak transcription	Psoas Muscle	Psoas
5	chr9:108200600-108203800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:108201000-108203400	Weak transcription	Right Atrium	heart
7	chr9:108201000-108203800	Weak transcription	Brain Angular Gyrus	brain
8	chr9:108201000-108207600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr9:108201000-108209600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr9:108201200-108204600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr9:108201200-108205000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:108201200-108205600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:108201400-108202800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr9:108201400-108203600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr9:108201400-108203600	Weak transcription	Brain Hippocampus Middle	brain
16	chr9:108201400-108206200	Weak transcription	HSMM	muscle
17	chr9:108201400-108206600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:108201600-108206200	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:108201600-108209800	Weak transcription	NHLF	lung
20	chr9:108201800-108202800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:108202000-108206200	Weak transcription	NH-A	brain
22	chr9:108202000-108206600	Weak transcription	NHDF-Ad	bronchial
23	chr9:108202200-108203600	Weak transcription	Liver	Liver
24	chr9:108202200-108206400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr9:108202400-108203400	Weak transcription	Brain Substantia Nigra	brain
26	chr9:108202400-108203600	Weak transcription	Fetal Heart	heart
27	chr9:108202400-108203600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr9:108202400-108204000	Weak transcription	Left Ventricle	heart
29	chr9:108202400-108206600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:108202600-108206600	Weak transcription	HSMMtube	muscle

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