Variant report

Variant	rs2026489
Chromosome Location	chr6:34108727-34108728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34096880..34099579-chr6:34108497..34110851,2	K562	blood:
2	chr6:34106807..34109627-chr6:34115783..34118454,2	K562	blood:
3	chr6:33956037..33957950-chr6:34107696..34110664,2	MCF-7	breast:
4	chr6:34107259..34108884-chr6:34110412..34112851,2	MCF-7	breast:
5	chr6:34034548..34036298-chr6:34107032..34109115,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2451347	1.00[EUR][1000 genomes]
rs3756923	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3756926	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59214571	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61131344	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs963733	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv885780	chr6:34050917-34131376	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34101600-34110200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:34101800-34108800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr6:34103800-34110400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:34104400-34111400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:34106000-34109000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:34107000-34110000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:34107400-34109600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:34107600-34109000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:34107600-34110000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:34107600-34110400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:34107600-34111400	Weak transcription	Right Atrium	heart
12	chr6:34108000-34108800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr6:34108200-34110400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:34108400-34109000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr6:34108400-34109000	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:34108400-34111400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
17	chr6:34108400-34111600	Bivalent Enhancer	Fetal Muscle Leg	muscle
18	chr6:34108600-34108800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:34108600-34108800	Bivalent Enhancer	Brain Anterior Caudate	brain
20	chr6:34108600-34108800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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