Variant report

Variant	rs2028235
Chromosome Location	chr8:4747772-4747773
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10105452	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap]
rs1031611	1.00[CEU][hapmap]
rs1031612	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs10435673	1.00[CEU][hapmap]
rs10435674	1.00[CEU][hapmap]
rs12541573	1.00[CEU][hapmap]
rs12681969	1.00[CEU][hapmap]
rs1350300	1.00[CEU][hapmap]
rs1350301	1.00[CEU][hapmap]
rs1379322	1.00[CEU][hapmap]
rs2043809	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs2118567	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs2164901	1.00[CEU][hapmap]
rs4875122	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs6558928	1.00[CEU][hapmap]
rs6558929	1.00[CEU][hapmap]
rs6558930	1.00[CEU][hapmap]
rs6985656	1.00[CEU][hapmap]
rs6990689	1.00[CEU][hapmap]
rs7000044	1.00[CEU][hapmap]
rs7007881	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010542	1.00[CEU][hapmap]
rs7017693	1.00[CEU][hapmap]
rs7815868	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs967587	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv609876	chr8:4494811-5092970	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1029480	chr8:4497596-5081032	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv498130	chr8:4532988-5176376	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv465393	chr8:4610345-4777295	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv609883	chr8:4610345-4777295	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1020907	chr8:4693024-4801941	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv889975	chr8:4697630-4748952	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv437593	chr8:4704541-4761765	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv2761226	chr8:4717499-4754777	Enhancers Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv609894	chr8:4718648-4755645	ZNF genes & repeats Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv470175	chr8:4718648-4755809	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv818585	chr8:4718648-4755809	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3692960	chr8:4718648-4755990	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv515524	chr8:4718648-4757384	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1022889	chr8:4718921-4754777	Enhancers Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv442087	chr8:4718921-4754781	Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv609895	chr8:4718921-4755645	Active TSS Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv514469	chr8:4718982-4754532	Weak transcription ZNF genes & repeats Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv465401	chr8:4729259-4749555	ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv609896	chr8:4729259-4749555	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv609897	chr8:4734649-4748952	ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
22	nsv1018423	chr8:4741805-4759133	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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