Variant report

Variant	rs2029277
Chromosome Location	chr8:90546805-90546806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:90545613..90547386-chr8:90627990..90630572,2	MCF-7	breast:
2	chr8:90539182..90543934-chr8:90545577..90548881,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251136	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1003843	1.00[YRI][hapmap]
rs1386646	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1386650	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1487669	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1487671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1586461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16895916	0.91[GIH][hapmap]
rs16897154	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16897660	0.88[CHD][hapmap]
rs1704784	0.90[EUR][1000 genomes]
rs17767359	0.86[EUR][1000 genomes]
rs501854	0.90[EUR][1000 genomes]
rs519031	0.90[EUR][1000 genomes]
rs521478	0.90[EUR][1000 genomes]
rs531109	0.90[EUR][1000 genomes]
rs552817	0.85[EUR][1000 genomes]
rs561177	0.90[EUR][1000 genomes]
rs610880	0.86[CEU][hapmap];1.00[YRI][hapmap];0.90[EUR][1000 genomes]
rs62532830	0.85[ASN][1000 genomes]
rs630391	0.83[EUR][1000 genomes]
rs7460672	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7833686	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	esv2761173	chr8:90404592-90592009	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1027327	chr8:90426338-90585108	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1028969	chr8:90475194-90650295	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv528988	chr8:90475375-90608246	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv611720	chr8:90476925-90608246	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv427825	chr8:90495139-90653696	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv525380	chr8:90532927-90546979	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv527244	chr8:90532927-90589630	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv870380	chr8:90546585-90720182	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90546400-90547000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr8:90546400-90547800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:90546600-90547000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr8:90546600-90547000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr8:90546600-90548000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:90546800-90547400	Active TSS	Hela-S3	cervix
7	chr8:90546800-90547600	Active TSS	A549	lung
8	chr8:90546800-90547800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:90546800-90548000	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr8:90546800-90548000	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr8:90546800-90548000	Active TSS	iPS-18 Cell Line	embryonic stem cell

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