Variant report

Variant	rs2030234
Chromosome Location	chr11:86965391-86965392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1011301	0.81[CEU][hapmap];0.85[GIH][hapmap]
rs10444376	0.83[CEU][hapmap]
rs10792930	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898646	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10898647	0.85[CEU][hapmap]
rs11235045	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11235048	0.83[CEU][hapmap]
rs11235049	0.81[EUR][1000 genomes]
rs11235050	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs11235051	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs11235052	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs11235055	0.85[CEU][hapmap]
rs11235057	0.84[CEU][hapmap]
rs11235060	0.85[CEU][hapmap];0.85[GIH][hapmap]
rs11235074	0.81[CEU][hapmap];0.85[GIH][hapmap]
rs12271067	0.85[CEU][hapmap];0.84[GIH][hapmap]
rs12278867	0.84[CEU][hapmap]
rs12284040	0.81[CEU][hapmap]
rs12293231	0.87[CEU][hapmap]
rs12295149	0.81[CEU][hapmap]
rs12363622	0.85[CEU][hapmap]
rs169971	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs17821231	0.85[CEU][hapmap];0.85[GIH][hapmap]
rs186198	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2054915	0.81[CEU][hapmap]
rs301579	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs301594	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs4943980	0.81[CEU][hapmap];0.85[GIH][hapmap]
rs4944686	0.84[CEU][hapmap]
rs4944689	0.85[CEU][hapmap]
rs564932	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs61552	0.86[ASW][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs61904503	0.85[AFR][1000 genomes]
rs6592344	0.81[CEU][hapmap];0.85[GIH][hapmap]
rs7102378	0.84[CEU][hapmap]
rs7113000	0.84[CEU][hapmap];1.00[YRI][hapmap]
rs7117687	0.82[GIH][hapmap]
rs7117839	0.81[CEU][hapmap];0.85[GIH][hapmap]
rs7118014	0.87[CEU][hapmap]
rs7119714	0.81[CEU][hapmap];0.85[GIH][hapmap]
rs7126948	0.83[CEU][hapmap]
rs7127921	0.81[CEU][hapmap];0.85[GIH][hapmap]
rs7128894	0.82[CEU][hapmap]
rs7130295	0.83[CEU][hapmap]
rs7130555	0.83[CEU][hapmap]
rs7936587	0.88[CEU][hapmap]
rs7939286	0.84[CEU][hapmap]
rs7945575	0.81[CEU][hapmap];0.85[GIH][hapmap]
rs7951097	0.86[CEU][hapmap]
rs7952272	0.84[CEU][hapmap]
rs7952278	0.84[CEU][hapmap]
rs7952287	0.84[CEU][hapmap]
rs7952708	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037042	chr11:86586876-86978492	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv541119	chr11:86586876-86978492	Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv1045057	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541121	chr11:86794670-87033779	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv468777	chr11:86794856-86985581	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv555707	chr11:86794856-86985581	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv468778	chr11:86850483-86974576	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv555708	chr11:86850483-86974576	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv898064	chr11:86864277-87013438	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	esv2829956	chr11:86872504-87025059	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv898065	chr11:86891077-86984439	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv898066	chr11:86891077-86989134	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv468779	chr11:86928253-87001892	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv555709	chr11:86928253-87001892	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv898068	chr11:86930270-87005969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
19	nsv898069	chr11:86932603-86984439	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
20	nsv898070	chr11:86932603-86989134	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
21	nsv555710	chr11:86947024-87001892	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
22	nsv555711	chr11:86960516-87001892	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
23	nsv555712	chr11:86961994-87007030	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
24	nsv898071	chr11:86963330-87001892	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
25	nsv898072	chr11:86963330-87005969	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
26	nsv898073	chr11:86963330-87013438	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
27	nsv898074	chr11:86963330-87034696	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	n/a
28	esv2631282	chr11:86964171-86965449	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86961400-86967800	Weak transcription	NHDF-Ad	bronchial
2	chr11:86962400-86972000	Weak transcription	Primary T cells from cord blood	blood
3	chr11:86962800-86977600	Weak transcription	K562	blood
4	chr11:86963000-86976200	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:86963200-86965800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr11:86963200-86969400	Weak transcription	Adipose Nuclei	Adipose
7	chr11:86964400-86966200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:86964400-86969400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:86964400-86969400	Weak transcription	HUVEC	blood vessel
10	chr11:86964400-86970800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:86964600-86970800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links