Variant report

Variant	rs2031328
Chromosome Location	chr10:98256973-98256974
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10786297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4146725	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs912487	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98251600-98260200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:98251600-98261600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:98254400-98266400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:98254800-98257200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:98256600-98257200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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