Variant report

Variant	rs2031844
Chromosome Location	chr13:93921542-93921543
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:93921090..93923272-chr13:93941054..93943049,2	K562	blood:
2	chr13:93908091..93910386-chr13:93918705..93921612,2	K562	blood:
3	chr13:93919996..93921843-chr13:93922617..93924683,3	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1116259	0.85[EUR][1000 genomes]
rs1116260	0.87[EUR][1000 genomes]
rs11839667	0.87[EUR][1000 genomes]
rs11840691	0.87[EUR][1000 genomes]
rs11843447	0.88[EUR][1000 genomes]
rs12427542	0.91[EUR][1000 genomes]
rs1887707	0.86[EUR][1000 genomes]
rs1887708	0.86[EUR][1000 genomes]
rs1887709	0.86[EUR][1000 genomes]
rs4773722	0.87[EUR][1000 genomes]
rs7326297	0.86[EUR][1000 genomes]
rs7334414	0.87[EUR][1000 genomes]
rs7992869	0.86[EUR][1000 genomes]
rs7994461	0.86[EUR][1000 genomes]
rs7999192	0.86[EUR][1000 genomes]
rs7999514	0.86[EUR][1000 genomes]
rs7999706	0.86[EUR][1000 genomes]
rs9516198	0.88[EUR][1000 genomes]
rs9516199	0.89[CEU][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9523967	0.87[EUR][1000 genomes]
rs9523968	0.86[EUR][1000 genomes]
rs9523969	0.85[EUR][1000 genomes]
rs9523970	0.85[EUR][1000 genomes]
rs9523971	0.85[EUR][1000 genomes]
rs9523972	0.87[EUR][1000 genomes]
rs9523976	0.86[EUR][1000 genomes]
rs9523978	0.86[EUR][1000 genomes]
rs9523982	0.88[CEU][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9523983	0.82[CEU][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9556274	0.87[EUR][1000 genomes]
rs9561289	0.87[EUR][1000 genomes]
rs9561293	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9561294	0.89[CEU][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2751156	chr13:93912999-93988638	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:93897200-93923000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:93901400-93923400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:93903000-93922800	Weak transcription	Fetal Stomach	stomach
4	chr13:93903000-93923000	Weak transcription	Fetal Intestine Small	intestine
5	chr13:93911200-93922200	Weak transcription	HepG2	liver
6	chr13:93915400-93923200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:93916400-93922200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr13:93917200-93921800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:93920400-93928800	Weak transcription	Right Atrium	heart
10	chr13:93920800-93921600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr13:93921200-93921600	Weak transcription	A549	lung
12	chr13:93921200-93922200	Weak transcription	Ovary	ovary
13	chr13:93921200-93923000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr13:93921200-93923000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr13:93921200-93923000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr13:93921200-93923200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr13:93921200-93923200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr13:93921200-93923200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr13:93921200-93931400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr13:93921400-93923200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr13:93921400-93931400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links