Variant report

Variant	rs20327
Chromosome Location	chr8:94913575-94913576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:94913574..94917508-chr8:94928247..94930539,4	MCF-7	breast:
2	chr8:94901313..94904055-chr8:94912308..94913891,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164951	Chromatin interaction
ENSG00000264448	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4265155	1.00[AMR][1000 genomes]
rs7464530	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017969	chr8:94029461-94930730	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv2754970	chr8:94675324-94991724	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:94907000-94915600	Weak transcription	NHEK	skin
2	chr8:94907000-94916200	Weak transcription	HMEC	breast
3	chr8:94907000-94916600	Weak transcription	NHLF	lung
4	chr8:94908600-94917200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:94909200-94918000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr8:94910200-94916200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr8:94910800-94914000	Weak transcription	NH-A	brain
8	chr8:94911000-94913600	Weak transcription	HSMM	muscle
9	chr8:94911000-94916200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:94911000-94916600	Weak transcription	Fetal Lung	lung
11	chr8:94911200-94916200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr8:94911400-94914000	Weak transcription	Right Atrium	heart
13	chr8:94911400-94914200	Weak transcription	Ovary	ovary
14	chr8:94911400-94915400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:94911400-94915800	Weak transcription	HUVEC	blood vessel
16	chr8:94911400-94916200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr8:94911400-94916200	Weak transcription	NHDF-Ad	bronchial
18	chr8:94911400-94916400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr8:94911400-94916400	Weak transcription	Aorta	Aorta
20	chr8:94911400-94916400	Weak transcription	Fetal Muscle Leg	muscle
21	chr8:94911400-94916400	Weak transcription	Osteobl	bone
22	chr8:94911600-94914000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr8:94911600-94916400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:94911800-94913600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr8:94911800-94914000	Weak transcription	Right Ventricle	heart
26	chr8:94911800-94915600	Weak transcription	Hela-S3	cervix
27	chr8:94911800-94916200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:94911800-94916200	Weak transcription	Fetal Intestine Small	intestine
29	chr8:94911800-94916400	Weak transcription	Fetal Intestine Large	intestine
30	chr8:94911800-94917200	Weak transcription	Left Ventricle	heart
31	chr8:94912400-94913800	Weak transcription	Psoas Muscle	Psoas
32	chr8:94912400-94914200	Weak transcription	Pancreas	Pancrea
33	chr8:94912400-94915600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:94912800-94915800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr8:94913000-94914600	Enhancers	Fetal Heart	heart
36	chr8:94913000-94914600	Enhancers	HSMMtube	muscle
37	chr8:94913400-94913600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links