Variant report

Variant	rs2032772
Chromosome Location	chr12:106341744-106341745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10507207	0.84[EUR][1000 genomes]
rs10861535	0.82[EUR][1000 genomes]
rs11112808	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11112810	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11112812	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11112815	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11608722	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11611601	0.84[EUR][1000 genomes]
rs11837217	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11837987	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12297788	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12425164	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12426791	0.85[EUR][1000 genomes]
rs12426802	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12582103	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12810562	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12814823	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12815201	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12816747	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12818417	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12832619	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12833614	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1344566	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1344567	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1345543	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1362980	0.85[EUR][1000 genomes]
rs1362981	0.85[EUR][1000 genomes]
rs1421454	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1421456	0.87[AMR][1000 genomes]
rs1421457	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1421458	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1421459	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1895105	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1895106	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2080755	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6539238	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6539239	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6539240	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6539241	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6539242	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7300069	0.85[EUR][1000 genomes]
rs7304960	0.85[AFR][1000 genomes]
rs7312545	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7953002	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7953243	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7955474	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7958273	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7960459	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7961513	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7965501	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7969437	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7971140	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7971261	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7973513	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7973846	0.85[EUR][1000 genomes]
rs7976523	0.85[EUR][1000 genomes]
rs9630290	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106336600-106347400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:106337800-106342400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:106339000-106342000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr12:106339000-106347600	Weak transcription	NHEK	skin
5	chr12:106339200-106343000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:106339200-106348600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:106339200-106348600	Weak transcription	HMEC	breast
8	chr12:106340400-106342800	Enhancers	Right Atrium	heart
9	chr12:106340600-106355800	Weak transcription	Esophagus	oesophagus
10	chr12:106341200-106342000	Weak transcription	HSMMtube	muscle
11	chr12:106341400-106342600	Weak transcription	Aorta	Aorta
12	chr12:106341400-106344800	Weak transcription	Fetal Heart	heart
13	chr12:106341600-106342200	Weak transcription	Right Ventricle	heart
14	chr12:106341600-106342400	Enhancers	Psoas Muscle	Psoas
15	chr12:106341600-106343000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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