Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:103654034..103655784-chr8:103767681..103769751,2	MCF-7	breast:
2	chr8:103653483..103655293-chr8:103663467..103667278,3	K562	blood:
3	chr8:103611739..103615321-chr8:103653896..103661701,12	MCF-7	breast:
4	chr8:103653489..103674518-chr8:103809987..103832119,275	MCF-7	breast:
5	chr8:103647316..103650383-chr8:103652114..103655661,3	K562	blood:
6	chr8:103644446..103678119-chr8:103815618..103829807,419	MCF-7	breast:
7	chr8:103653546..103657405-chr8:103873779..103877685,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11552577	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs1434278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1991934	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2436932	0.81[JPT][hapmap]
rs2436966	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2436968	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2511657	0.81[JPT][hapmap]
rs2511662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2511670	0.90[JPT][hapmap]
rs2511671	0.90[JPT][hapmap];0.81[LWK][hapmap]
rs3133287	0.90[JPT][hapmap];0.81[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103644800-103659600	Weak transcription	Spleen	Spleen
2	chr8:103645600-103660000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr8:103647000-103661600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:103647000-103662000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:103647000-103662000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:103648200-103661800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:103649000-103659800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:103649600-103659800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:103649800-103662000	Weak transcription	Fetal Stomach	stomach
10	chr8:103650000-103659600	Weak transcription	Placenta	Placenta
11	chr8:103650200-103660000	Weak transcription	Colon Smooth Muscle	Colon
12	chr8:103652200-103654200	Weak transcription	HepG2	liver
13	chr8:103652400-103659600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr8:103652400-103659800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr8:103652600-103659600	Weak transcription	Fetal Intestine Small	intestine
16	chr8:103652600-103659800	Weak transcription	Fetal Intestine Large	intestine
17	chr8:103653200-103654200	Weak transcription	Fetal Brain Male	brain
18	chr8:103654000-103659600	Weak transcription	Aorta	Aorta
19	chr8:103654000-103659800	Weak transcription	Lung	lung
20	chr8:103654000-103662200	Weak transcription	Gastric	stomach

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