Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10197022	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10803741	0.81[AMR][1000 genomes]
rs11695533	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11891008	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12692449	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12989918	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12991316	0.81[AMR][1000 genomes]
rs12992621	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs13003327	0.82[CHB][hapmap];0.87[AMR][1000 genomes]
rs13003710	0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13004740	0.80[AMR][1000 genomes]
rs13011455	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13015144	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13016049	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13019206	0.87[AMR][1000 genomes]
rs13020034	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13020054	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13025593	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13034603	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4669790	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4669792	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9287740	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9287741	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs972873	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv833403	chr2:11944552-12125634	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12096400-12104200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:12101800-12104400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:12102000-12105800	Weak transcription	GM12878-XiMat	blood
4	chr2:12102200-12107000	Weak transcription	Fetal Lung	lung
5	chr2:12102600-12103200	Enhancers	Left Ventricle	heart
6	chr2:12102600-12104000	Enhancers	Rectal Smooth Muscle	rectum
7	chr2:12102600-12104000	Enhancers	K562	blood
8	chr2:12102600-12105000	Enhancers	Colon Smooth Muscle	Colon
9	chr2:12102800-12103200	Enhancers	Right Atrium	heart
10	chr2:12102800-12103400	Flanking Active TSS	Fetal Kidney	kidney

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