Variant report

Variant	rs2034017
Chromosome Location	chr11:100762336-100762337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10488785	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11224506	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11224510	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1940225	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2509107	0.85[EUR][1000 genomes]
rs4754707	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs561268	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs612046	0.85[EUR][1000 genomes]
rs634636	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs651301	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs664212	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100755000-100766200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:100758400-100798400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:100758600-100773400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:100758600-100795200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:100758800-100789400	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:100758800-100791200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr11:100760400-100762600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr11:100760800-100763800	Enhancers	NHDF-Ad	bronchial
9	chr11:100761000-100773400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:100761200-100762600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:100761200-100762800	Enhancers	HSMM	muscle
12	chr11:100761200-100762800	Enhancers	NHLF	lung
13	chr11:100761200-100764000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:100761600-100777400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:100761600-100788800	Weak transcription	Fetal Heart	heart
16	chr11:100761800-100773400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:100762000-100762800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:100762000-100762800	Enhancers	NH-A	brain
19	chr11:100762000-100763000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr11:100762000-100763000	Enhancers	Osteobl	bone
21	chr11:100762200-100763400	Weak transcription	Muscle Satellite Cultured Cells	--

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