Variant report

Variant	rs2034255
Chromosome Location	chr2:179006680-179006681
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10176475	0.93[ASN][1000 genomes]
rs11886139	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11887974	0.93[ASN][1000 genomes]
rs13408924	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1369515	0.90[ASN][1000 genomes]
rs1369517	0.87[ASN][1000 genomes]
rs2163647	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4300869	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56103916	0.88[ASN][1000 genomes]
rs6710329	0.87[ASN][1000 genomes]
rs6714047	0.93[ASN][1000 genomes]
rs6740828	0.88[ASN][1000 genomes]
rs6754705	0.88[ASN][1000 genomes]
rs7583491	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178978000-179016400	Weak transcription	Gastric	stomach
2	chr2:178987800-179017000	Weak transcription	Fetal Lung	lung
3	chr2:178990200-179007000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr2:178991000-179009600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:178991200-179007400	Weak transcription	Osteobl	bone
6	chr2:178992400-179007800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:178993200-179016800	Weak transcription	Fetal Intestine Small	intestine
8	chr2:178994400-179007200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr2:178994400-179007200	Weak transcription	HSMMtube	muscle
10	chr2:178994600-179007000	Weak transcription	Fetal Kidney	kidney
11	chr2:178997800-179006800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:178997800-179008200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr2:179000200-179007200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:179000400-179007200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:179001600-179007200	Weak transcription	HSMM	muscle
16	chr2:179002200-179007200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr2:179002400-179007800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:179002400-179016800	Weak transcription	Adipose Nuclei	Adipose
19	chr2:179002800-179007200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:179006200-179007000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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