Variant report

Variant	rs2034779
Chromosome Location	chr8:99023531-99023532
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:99014119..99017352-chr8:99021059..99024142,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1466428	0.91[JPT][hapmap]
rs1965914	0.91[JPT][hapmap]
rs2248014	0.90[JPT][hapmap]
rs2255464	0.90[JPT][hapmap]
rs2513809	0.85[JPT][hapmap]
rs2615	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	esv15294	chr8:99017130-99025235	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99008400-99045000	Weak transcription	Colonic Mucosa	Colon
2	chr8:99009000-99030000	Weak transcription	Pancreas	Pancrea
3	chr8:99009000-99030200	Weak transcription	Esophagus	oesophagus
4	chr8:99012000-99028800	Weak transcription	Aorta	Aorta
5	chr8:99012000-99032000	Weak transcription	Gastric	stomach
6	chr8:99012400-99028800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr8:99014200-99025400	Genic enhancers	Fetal Muscle Leg	muscle
8	chr8:99014200-99029600	Weak transcription	Fetal Intestine Large	intestine
9	chr8:99015000-99034400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:99015200-99023600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr8:99015800-99023800	Weak transcription	Spleen	Spleen
12	chr8:99017000-99025400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:99018000-99025000	Genic enhancers	Fetal Muscle Trunk	muscle
14	chr8:99018200-99024000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr8:99019000-99033200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr8:99019400-99025200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr8:99019800-99025400	Genic enhancers	Fetal Stomach	stomach
18	chr8:99020000-99024600	Enhancers	HSMM	muscle
19	chr8:99020000-99033400	Weak transcription	Left Ventricle	heart
20	chr8:99020200-99024000	Enhancers	Osteobl	bone
21	chr8:99020600-99023600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:99020800-99025200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:99021000-99027200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr8:99021000-99028600	Weak transcription	Liver	Liver
25	chr8:99021000-99032200	Weak transcription	Brain Substantia Nigra	brain
26	chr8:99021200-99024800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr8:99021200-99032800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr8:99021200-99053600	Weak transcription	A549	lung
29	chr8:99021400-99024600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr8:99021400-99026000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:99021400-99029400	Weak transcription	Brain Angular Gyrus	brain
32	chr8:99021400-99029600	Weak transcription	Brain Hippocampus Middle	brain
33	chr8:99021400-99029800	Weak transcription	Brain Anterior Caudate	brain
34	chr8:99021400-99029800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr8:99021400-99033400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr8:99021400-99043800	Weak transcription	Brain Germinal Matrix	brain
37	chr8:99021600-99024400	Enhancers	Fetal Heart	heart
38	chr8:99021600-99028800	Weak transcription	Adipose Nuclei	Adipose
39	chr8:99022000-99023800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr8:99022000-99024200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr8:99022200-99023600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr8:99022200-99023800	Enhancers	Fetal Lung	lung
43	chr8:99022200-99024400	Enhancers	HSMMtube	muscle
44	chr8:99022400-99023600	Enhancers	NH-A	brain
45	chr8:99022400-99023800	Enhancers	NHEK	skin
46	chr8:99022400-99024200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr8:99022400-99024200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr8:99022400-99024200	Enhancers	Placenta	Placenta
49	chr8:99022400-99024600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr8:99022400-99024800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links