Variant report

Variant	rs2034802
Chromosome Location	chr2:63968655-63968656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:63960179..63963716-chr2:63967320..63970574,3	MCF-7	breast:
2	chr2:63965360..63967631-chr2:63967788..63969459,2	MCF-7	breast:
3	chr2:63963078..63965586-chr2:63967803..63969342,2	MCF-7	breast:
4	chr2:63967574..63971406-chr2:64066655..64070037,5	MCF-7	breast:
5	chr2:63966027..63970127-chr2:64066490..64069650,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4671535	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63957400-63971200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:63964400-63974000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:63964800-63969800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:63965000-63969200	Weak transcription	Fetal Lung	lung
5	chr2:63965200-63969600	Weak transcription	Pancreas	Pancrea
6	chr2:63965200-63970200	Weak transcription	Psoas Muscle	Psoas
7	chr2:63965400-63969200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:63965400-63969400	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:63965600-63969200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:63967400-63969400	Enhancers	Hela-S3	cervix
11	chr2:63967400-63969800	Enhancers	HepG2	liver
12	chr2:63967800-63969400	Enhancers	Liver	Liver
13	chr2:63967800-63969600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:63967800-63969600	Flanking Active TSS	A549	lung
15	chr2:63967800-63969800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:63967800-63969800	Enhancers	Osteobl	bone
17	chr2:63967800-63970000	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr2:63967800-63970000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr2:63967800-63970000	Enhancers	HMEC	breast
20	chr2:63967800-63970000	Enhancers	NHEK	skin
21	chr2:63968000-63969000	Weak transcription	HSMM	muscle
22	chr2:63968000-63969200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr2:63968000-63969600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:63968000-63970000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr2:63968000-63970000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr2:63968000-63970200	Enhancers	Adipose Nuclei	Adipose
27	chr2:63968200-63969200	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr2:63968200-63969800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr2:63968200-63969800	Enhancers	NHDF-Ad	bronchial
30	chr2:63968200-63970000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:63968200-63970200	Enhancers	HUVEC	blood vessel
32	chr2:63968200-63970200	Enhancers	NHLF	lung
33	chr2:63968200-63971600	Enhancers	HSMMtube	muscle
34	chr2:63968400-63969200	Enhancers	NH-A	brain
35	chr2:63968600-63969200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr2:63968600-63971000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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