Variant report

Variant	rs2036246
Chromosome Location	chr4:31069340-31069341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11721860	1.00[ASN][1000 genomes]
rs11729276	0.87[ASN][1000 genomes]
rs1463850	0.98[ASN][1000 genomes]
rs16884321	1.00[ASN][1000 genomes]
rs16884329	0.99[ASN][1000 genomes]
rs6448741	0.87[ASN][1000 genomes]
rs6813610	0.99[ASN][1000 genomes]
rs73218811	0.87[ASN][1000 genomes]
rs73218812	0.86[ASN][1000 genomes]
rs73218813	0.86[ASN][1000 genomes]
rs73218824	0.93[ASN][1000 genomes]
rs7661111	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31058000-31077200	Weak transcription	Aorta	Aorta
2	chr4:31066400-31088600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:31067200-31070800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:31067800-31073400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:31068800-31070200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:31069200-31070200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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