Variant report

Variant	rs2038835
Chromosome Location	chr6:121772406-121772407
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11154026	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12204909	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12207042	0.82[EUR][1000 genomes]
rs2038834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2389541	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62427611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930871	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7753979	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530527	chr6:121298528-121789855	ZNF genes & repeats Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121764200-121775200	Weak transcription	Psoas Muscle	Psoas
2	chr6:121769200-121772800	Weak transcription	Fetal Stomach	stomach
3	chr6:121769200-121773000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:121769200-121774000	Weak transcription	Right Atrium	heart
5	chr6:121769200-121776800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:121769200-121776800	Weak transcription	Esophagus	oesophagus
7	chr6:121769400-121772800	Weak transcription	HSMM	muscle
8	chr6:121769400-121772800	Weak transcription	NHLF	lung
9	chr6:121769400-121774200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:121769400-121776400	Weak transcription	Aorta	Aorta
11	chr6:121769400-121779000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:121769600-121772800	Weak transcription	Placenta	Placenta
13	chr6:121770200-121774800	Weak transcription	Ovary	ovary
14	chr6:121770400-121772800	Weak transcription	NHEK	skin
15	chr6:121770800-121772800	Weak transcription	Fetal Lung	lung
16	chr6:121770800-121774400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:121770800-121778800	Weak transcription	A549	lung
18	chr6:121771000-121772600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:121771000-121772600	Weak transcription	Adipose Nuclei	Adipose
20	chr6:121771000-121773000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr6:121771000-121776800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:121771200-121774000	Weak transcription	NH-A	brain
23	chr6:121771400-121773000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:121771400-121773000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:121771400-121773000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:121771400-121773000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:121771400-121773000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:121771400-121773000	Weak transcription	NHDF-Ad	bronchial
29	chr6:121771400-121774600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr6:121771400-121774600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:121771400-121774800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr6:121771400-121775200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr6:121771400-121777200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr6:121771600-121773200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr6:121771600-121773200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:121771600-121773200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr6:121771600-121773200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:121771600-121773400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr6:121771600-121773400	Weak transcription	Left Ventricle	heart
40	chr6:121771600-121774800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:121771800-121773400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:121772000-121773400	Weak transcription	HUVEC	blood vessel
43	chr6:121772000-121773800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr6:121772000-121774000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:121772200-121774400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:121772200-121777200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:121772200-121777200	Weak transcription	Osteobl	bone

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