Variant report

Variant	rs2039781
Chromosome Location	chr1:223118293-223118294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2039783	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2926161	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71644720	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv873206	chr1:222985197-223124916	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1014896	chr1:223070446-223327185	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv873207	chr1:223078802-223292632	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv1828950	chr1:223111708-223132433	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223102200-223119400	Weak transcription	NHLF	lung
2	chr1:223102200-223128000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:223102200-223130800	Weak transcription	Fetal Brain Male	brain
4	chr1:223102400-223121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:223102600-223121200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:223102800-223124400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:223105000-223128800	Weak transcription	Ovary	ovary
8	chr1:223105200-223118400	Weak transcription	HSMMtube	muscle
9	chr1:223105400-223119000	Weak transcription	Right Atrium	heart
10	chr1:223108000-223120600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr1:223111600-223122800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr1:223112600-223126200	Weak transcription	Osteobl	bone
13	chr1:223113400-223119600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:223114000-223118800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr1:223114000-223120000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr1:223114200-223129000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:223114200-223130600	Weak transcription	Left Ventricle	heart
18	chr1:223114600-223118400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:223114600-223122800	Weak transcription	Gastric	stomach
20	chr1:223114600-223124400	Weak transcription	Fetal Lung	lung
21	chr1:223114800-223121600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr1:223114800-223129200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:223115000-223118600	Weak transcription	Dnd41	blood
24	chr1:223115200-223118600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr1:223115200-223118800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:223115200-223119800	Weak transcription	Colon Smooth Muscle	Colon
27	chr1:223115200-223121200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr1:223115200-223121800	Weak transcription	Fetal Kidney	kidney
29	chr1:223115200-223126600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr1:223115400-223119000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:223116200-223121000	Strong transcription	Fetal Muscle Leg	muscle
32	chr1:223116600-223123000	Weak transcription	Esophagus	oesophagus
33	chr1:223116600-223126600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr1:223116800-223118400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr1:223116800-223118400	Weak transcription	Right Ventricle	heart
36	chr1:223116800-223118800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr1:223116800-223119000	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr1:223116800-223119800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr1:223116800-223121200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr1:223116800-223123000	Weak transcription	Aorta	Aorta
41	chr1:223116800-223123000	Weak transcription	Pancreas	Pancrea
42	chr1:223116800-223124000	Weak transcription	Stomach Mucosa	stomach
43	chr1:223116800-223128200	Weak transcription	Placenta	Placenta
44	chr1:223116800-223130400	Weak transcription	Liver	Liver
45	chr1:223116800-223130600	Weak transcription	Brain Substantia Nigra	brain
46	chr1:223116800-223135800	Weak transcription	Fetal Intestine Small	intestine
47	chr1:223117000-223120000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr1:223117000-223121400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr1:223117000-223123000	Weak transcription	Fetal Intestine Large	intestine
50	chr1:223117000-223123200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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