The 2.0 version of rSNPBase

Variant report

Variant rs2039782
Chromosome Location chr1:223122462-223122463
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:223102200-223128000 Weak transcription Fetal Muscle Trunk muscle
2 chr1:223102200-223130800 Weak transcription Fetal Brain Male brain
3 chr1:223102800-223124400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
4 chr1:223105000-223128800 Weak transcription Ovary ovary
5 chr1:223111600-223122800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr1:223112600-223126200 Weak transcription Osteobl bone
7 chr1:223114200-223129000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr1:223114200-223130600 Weak transcription Left Ventricle heart
9 chr1:223114600-223122800 Weak transcription Gastric stomach
10 chr1:223114600-223124400 Weak transcription Fetal Lung lung
11 chr1:223114800-223129200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr1:223115200-223126600 Weak transcription Rectal Smooth Muscle rectum
13 chr1:223116600-223123000 Weak transcription Esophagus oesophagus
14 chr1:223116600-223126600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:223116800-223123000 Weak transcription Aorta Aorta
16 chr1:223116800-223123000 Weak transcription Pancreas Pancrea
17 chr1:223116800-223124000 Weak transcription Stomach Mucosa stomach
18 chr1:223116800-223128200 Weak transcription Placenta Placenta
19 chr1:223116800-223130400 Weak transcription Liver Liver
20 chr1:223116800-223130600 Weak transcription Brain Substantia Nigra brain
21 chr1:223116800-223135800 Weak transcription Fetal Intestine Small intestine
22 chr1:223117000-223123000 Weak transcription Fetal Intestine Large intestine
23 chr1:223117000-223123200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
24 chr1:223117000-223123400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr1:223117000-223125000 Weak transcription Primary T cells from cord blood blood
26 chr1:223117000-223126200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr1:223117000-223127000 Weak transcription Fetal Brain Female brain
28 chr1:223117000-223129200 Weak transcription Brain Anterior Caudate brain
29 chr1:223117000-223135000 Weak transcription Primary B cells from cord blood blood
30 chr1:223117000-223138400 Weak transcription Primary B cells from peripheral blood blood
31 chr1:223117200-223122800 Weak transcription Adipose Nuclei Adipose
32 chr1:223117200-223127800 Weak transcription Fetal Stomach stomach
33 chr1:223117200-223133800 Weak transcription Lung lung
34 chr1:223117600-223125000 Weak transcription Fetal Adrenal Gland Adrenal Gland
35 chr1:223118200-223124000 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr1:223119200-223131400 Weak transcription Right Ventricle heart
37 chr1:223120400-223124400 Weak transcription Rectal Mucosa Donor 31 rectum
38 chr1:223120400-223126600 Weak transcription Colon Smooth Muscle Colon
39 chr1:223120600-223124200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
40 chr1:223121000-223128000 Weak transcription Fetal Muscle Leg muscle
41 chr1:223121200-223123800 Strong transcription Breast Myoepithelial Primary Cells Breast
42 chr1:223121800-223124400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015