Variant report

Variant	rs2041
Chromosome Location	chr3:43391043-43391044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:43389522-43394326	HepG2	liver:	n/a	n/a
2	CTCF	chr3:43390920-43391070	AG04450	lung:	n/a	n/a
3	TEAD4	chr3:43390668-43391045	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43390162..43392791-chr3:43393918..43397440,3	K562	blood:
2	chr3:43355662..43357560-chr3:43390404..43392555,2	K562	blood:

Variant related genes	Relation type
ENSG00000271941	TF binding region
ENSG00000241939	Chromatin interaction

rs_ID	r²[population]
rs17406162	1.00[AFR][1000 genomes]
rs17473118	1.00[ASW][hapmap]
rs73088733	1.00[AFR][1000 genomes]

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43373400-43393400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:43379600-43392800	Strong transcription	Placenta	Placenta
3	chr3:43380000-43392200	Strong transcription	HepG2	liver
4	chr3:43380000-43392800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:43380800-43391800	Strong transcription	Fetal Stomach	stomach
6	chr3:43380800-43392600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:43380800-43392800	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:43380800-43392800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr3:43380800-43393000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr3:43380800-43393200	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:43381000-43392800	Weak transcription	Fetal Brain Male	brain
12	chr3:43381000-43393800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:43381000-43396400	Weak transcription	Stomach Mucosa	stomach
14	chr3:43381200-43392800	Strong transcription	Fetal Intestine Large	intestine
15	chr3:43381400-43392600	Strong transcription	Primary hematopoietic stem cells	blood
16	chr3:43381400-43392800	Strong transcription	Duodenum Mucosa	Duodenum
17	chr3:43381400-43393000	Strong transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:43381600-43392200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr3:43381800-43392000	Strong transcription	Brain Anterior Caudate	brain
20	chr3:43381800-43392800	Strong transcription	Brain Germinal Matrix	brain
21	chr3:43382000-43391600	Strong transcription	Fetal Intestine Small	intestine
22	chr3:43382000-43392200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr3:43382000-43392200	Strong transcription	Primary B cells from peripheral blood	blood
24	chr3:43382000-43393400	Strong transcription	Primary B cells from cord blood	blood
25	chr3:43382400-43391600	Genic enhancers	Primary T cells fromperipheralblood	blood
26	chr3:43382400-43392200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:43382400-43395400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:43382600-43392800	Strong transcription	Liver	Liver
29	chr3:43383000-43391200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
30	chr3:43383200-43391400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr3:43383200-43391600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:43383800-43391200	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr3:43384200-43394000	Weak transcription	Fetal Heart	heart
34	chr3:43385200-43396800	Weak transcription	Ovary	ovary
35	chr3:43385800-43392800	Strong transcription	HUVEC	blood vessel
36	chr3:43385800-43402000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr3:43386000-43392200	Strong transcription	Rectal Smooth Muscle	rectum
38	chr3:43386000-43392800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:43386200-43391600	Genic enhancers	Fetal Thymus	thymus
40	chr3:43387200-43392800	Strong transcription	Skeletal Muscle Male	skeletal muscle
41	chr3:43387200-43394000	Weak transcription	Small Intestine	intestine
42	chr3:43387600-43391400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr3:43387600-43402600	Weak transcription	Right Atrium	heart
44	chr3:43388000-43391600	Strong transcription	Colon Smooth Muscle	Colon
45	chr3:43388000-43392400	Weak transcription	NHDF-Ad	bronchial
46	chr3:43388000-43392800	Strong transcription	Adipose Nuclei	Adipose
47	chr3:43388200-43391600	Strong transcription	HUES64 Cell Line	embryonic stem cell
48	chr3:43388200-43392200	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:43388200-43392800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:43388400-43391600	Strong transcription	Colonic Mucosa	Colon

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