Variant report

Variant	rs2042840
Chromosome Location	chr2:231447188-231447189
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11689558	1.00[YRI][hapmap]
rs1564322	1.00[JPT][hapmap]
rs2042839	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62194773	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62194775	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62194776	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62194778	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62194779	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62194780	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62194781	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62194782	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62194783	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18000	chr2:231072978-231467847	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv875953	chr2:231415189-231457819	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv875955	chr2:231440555-231500805	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv961010	chr2:231446732-231451285	Flanking Active TSS Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231441000-231447200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr2:231443400-231451000	Weak transcription	Primary T cells from cord blood	blood
3	chr2:231443400-231453800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:231443400-231454400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr2:231443400-231454600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr2:231443800-231447600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr2:231444000-231447400	Weak transcription	Primary B cells from cord blood	blood
8	chr2:231444000-231447600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr2:231446600-231447200	Enhancers	GM12878-XiMat	blood
10	chr2:231446800-231449000	Enhancers	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links