Variant report

Variant	rs2043510
Chromosome Location	chr8:11225168-11225169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10503421	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11777746	0.82[AMR][1000 genomes]
rs11782430	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12549871	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12682349	0.82[AMR][1000 genomes]
rs1435275	0.81[AMR][1000 genomes]
rs1865521	0.88[AMR][1000 genomes]
rs2043508	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2263511	0.85[AMR][1000 genomes]
rs2263512	0.85[AMR][1000 genomes]
rs2437152	0.81[AMR][1000 genomes]
rs2572371	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2572379	0.81[AMR][1000 genomes]
rs2572380	0.81[AMR][1000 genomes]
rs2572386	0.81[AMR][1000 genomes]
rs2572389	0.81[AMR][1000 genomes]
rs2572391	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2572394	0.81[AMR][1000 genomes]
rs2572395	0.80[AMR][1000 genomes]
rs2572399	0.81[AMR][1000 genomes]
rs2572400	0.81[AMR][1000 genomes]
rs2572450	0.85[AMR][1000 genomes]
rs2572452	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2736280	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2736282	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2736283	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2736285	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2736286	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2736287	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2736288	0.86[AMR][1000 genomes]
rs2736290	0.81[AMR][1000 genomes]
rs2736292	0.85[AMR][1000 genomes]
rs2736293	0.81[AMR][1000 genomes]
rs2736294	0.81[AMR][1000 genomes]
rs2736295	0.81[AMR][1000 genomes]
rs2736296	0.81[AMR][1000 genomes]
rs2736297	0.81[AMR][1000 genomes]
rs2736298	0.82[AMR][1000 genomes]
rs2736300	0.81[AMR][1000 genomes]
rs2736302	0.81[AMR][1000 genomes]
rs2736303	0.81[AMR][1000 genomes]
rs2736304	0.80[AMR][1000 genomes]
rs2898272	0.85[AMR][1000 genomes]
rs4448232	0.88[AMR][1000 genomes]
rs4631424	0.81[AMR][1000 genomes]
rs57629785	0.81[AMR][1000 genomes]
rs6601582	0.82[AMR][1000 genomes]
rs6601585	0.85[AMR][1000 genomes]
rs7820301	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7821302	0.81[AMR][1000 genomes]
rs7821459	0.81[AMR][1000 genomes]
rs7828263	0.81[AMR][1000 genomes]
rs7834572	0.81[AMR][1000 genomes]
rs920044	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv831233	chr8:11046854-11234384	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1022525	chr8:11066191-11309356	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv539474	chr8:11066191-11309356	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv1033312	chr8:11126800-11252170	Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv890354	chr8:11176147-11266131	Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2043510	MTMR9	Cis_1M	lymphoblastoid	RTeQTL
rs2043510	C8orf5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11206400-11226400	Weak transcription	Brain Anterior Caudate	brain
2	chr8:11216000-11227400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:11218000-11237600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:11222400-11225400	Strong transcription	K562	blood
5	chr8:11222800-11226400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr8:11223400-11225800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:11223400-11225800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:11223400-11229000	Weak transcription	Pancreas	Pancrea
9	chr8:11224000-11225600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr8:11225000-11225800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:11225000-11226400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links