Variant report
Variant | rs2044245 |
---|---|
Chromosome Location | chr2:31396063-31396064 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10168043 | 0.82[ASN][1000 genomes] |
rs10171858 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10172706 | 0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs10180369 | 0.82[ASN][1000 genomes] |
rs10184074 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12620887 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs12622868 | 0.90[ASN][1000 genomes] |
rs12992405 | 0.81[CHB][hapmap];0.90[JPT][hapmap] |
rs13421721 | 0.82[AMR][1000 genomes] |
rs1348437 | 0.92[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1373217 | 0.87[ASN][1000 genomes] |
rs1443708 | 0.91[CHB][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1443709 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1443710 | 0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs1443712 | 0.87[ASN][1000 genomes] |
rs1443713 | 0.85[ASN][1000 genomes] |
rs1443714 | 0.87[ASN][1000 genomes] |
rs1465972 | 1.00[CHB][hapmap] |
rs2044244 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2044246 | 0.92[CHB][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap] |
rs4592896 | 0.92[CHB][hapmap] |
rs4952051 | 0.92[CHB][hapmap];0.90[JPT][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6720151 | 0.81[AMR][1000 genomes] |
rs6741329 | 0.92[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7422120 | 1.00[CHB][hapmap] |
rs7579175 | 0.81[AMR][1000 genomes] |
rs7599162 | 0.87[ASN][1000 genomes] |
rs7602639 | 0.82[ASN][1000 genomes] |
rs9308916 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs9308917 | 0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes] |
rs961641 | 1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes] |
rs961642 | 0.92[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv948552 | chr2:31118599-31595424 | Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
2 | nsv873771 | chr2:31363732-31416582 | Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv873772 | chr2:31363732-31417863 | Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv873773 | chr2:31363732-31426449 | Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv873774 | chr2:31363732-31432367 | Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | nsv873775 | chr2:31363732-31439443 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv873776 | chr2:31384009-31439443 | Enhancers Bivalent Enhancer Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
8 | nsv997652 | chr2:31385242-31431588 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
9 | nsv535611 | chr2:31385242-31431588 | ZNF genes & repeats Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:31388400-31407000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
2 | chr2:31391200-31418600 | Weak transcription | Gastric | stomach |
3 | chr2:31394800-31419600 | Weak transcription | Primary B cells from cord blood | blood |
4 | chr2:31395200-31416600 | Weak transcription | Primary B cells from peripheral blood | blood |
5 | chr2:31395800-31415000 | Weak transcription | Esophagus | oesophagus |