Variant report

Variant	rs2046251
Chromosome Location	chr6:69813713-69813714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1482327	0.94[CEU][hapmap]
rs1912987	0.87[CEU][hapmap]
rs1912988	0.94[CEU][hapmap]
rs2343260	0.94[CEU][hapmap]
rs2343400	1.00[ASN][1000 genomes]
rs314194	0.81[CEU][hapmap]
rs314218	0.87[CEU][hapmap]
rs4706849	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs67807	0.87[CEU][hapmap]
rs7739401	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69799400-69820800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:69800800-69820600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69813400-69816200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:69813600-69816200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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