Variant report

Variant	rs2046818
Chromosome Location	chr3:159167126-159167127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11922740	0.86[EUR][1000 genomes]
rs11928594	0.89[EUR][1000 genomes]
rs66727256	0.85[EUR][1000 genomes]
rs67390539	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998949	chr3:158774806-159394550	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004990	chr3:159090974-159174954	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877695	chr3:159152259-159254385	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159166400-159167200	Enhancers	Osteobl	bone
2	chr3:159166600-159167200	Enhancers	NHLF	lung
3	chr3:159166600-159167600	Enhancers	Liver	Liver
4	chr3:159166800-159167200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:159166800-159167200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:159166800-159167200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:159167000-159167200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr3:159167000-159167200	Enhancers	HMEC	breast
9	chr3:159167000-159173400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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