Variant report

Variant	rs2046820
Chromosome Location	chr6:34106931-34106932
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34094147..34097219-chr6:34104417..34107232,3	K562	blood:
2	chr6:34106807..34109627-chr6:34115783..34118454,2	K562	blood:
3	chr6:34094975..34100252-chr6:34102486..34107232,5	K562	blood:
4	chr6:34105117..34107025-chr6:34191466..34193901,2	K562	blood:
5	chr6:34100738..34104812-chr6:34105536..34108241,3	MCF-7	breast:
6	chr6:34063467..34066322-chr6:34104288..34107163,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124493	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11970077	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs13214721	1.00[CHB][hapmap]
rs2249430	1.00[EUR][1000 genomes]
rs4472348	1.00[CHB][hapmap]
rs57726874	1.00[EUR][1000 genomes]
rs58502241	1.00[EUR][1000 genomes]
rs58817941	1.00[EUR][1000 genomes]
rs58905671	1.00[EUR][1000 genomes]
rs61031389	1.00[EUR][1000 genomes]
rs73412893	1.00[EUR][1000 genomes]
rs73415018	1.00[EUR][1000 genomes]
rs73415047	1.00[EUR][1000 genomes]
rs73415075	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462900	chr6:33932442-34195011	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv602843	chr6:33932442-34195011	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv432881	chr6:34026522-34213822	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
5	nsv885780	chr6:34050917-34131376	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
6	nsv462902	chr6:34056726-34195011	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv602862	chr6:34056726-34195011	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34101600-34110200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:34101800-34108800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr6:34102000-34107400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:34103800-34110400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:34104000-34107600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:34104400-34107800	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:34104400-34111400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:34104600-34107800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:34105000-34107600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:34105800-34107400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr6:34106000-34107000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:34106000-34107000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:34106000-34107600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:34106000-34109000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr6:34106200-34107000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:34106200-34107200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
17	chr6:34106200-34107400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:34106400-34107000	Enhancers	Brain Anterior Caudate	brain
19	chr6:34106400-34107400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr6:34106600-34107200	Enhancers	Brain Hippocampus Middle	brain
21	chr6:34106800-34107000	Bivalent Enhancer	Placenta	Placenta
22	chr6:34106800-34107800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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