Variant report

Variant	rs2046965
Chromosome Location	chr3:139009532-139009533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12632379	0.84[ASN][1000 genomes]
rs12632382	0.90[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs4438684	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4894342	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591856	chr3:139000844-139037832	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1005158	chr3:139001736-139073011	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139000800-139011200	Weak transcription	NHLF	lung
2	chr3:139002000-139011600	Weak transcription	HSMM	muscle
3	chr3:139007000-139012000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:139007200-139011000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:139007800-139010000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:139007800-139010200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:139007800-139018000	Weak transcription	Gastric	stomach
8	chr3:139008000-139009800	Weak transcription	NHDF-Ad	bronchial
9	chr3:139008000-139010800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:139008000-139011400	Weak transcription	Pancreas	Pancrea
11	chr3:139008000-139013800	Weak transcription	Left Ventricle	heart
12	chr3:139008600-139011200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:139009000-139011000	Weak transcription	K562	blood
14	chr3:139009200-139009600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr3:139009200-139011600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:139009400-139009600	Enhancers	Placenta	Placenta
17	chr3:139009400-139010000	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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