Variant report

Variant	rs2048244
Chromosome Location	chr18:29533282-29533283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12954934	0.90[JPT][hapmap]
rs2421178	0.90[JPT][hapmap]
rs4344833	0.90[JPT][hapmap]
rs8097835	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067252	chr18:29475073-29583744	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1065285	chr18:29527884-29614986	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29525600-29537400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr18:29528800-29533400	Weak transcription	K562	blood
3	chr18:29530800-29534400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr18:29530800-29534600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr18:29531000-29533800	Weak transcription	Fetal Intestine Large	intestine
6	chr18:29531000-29534400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr18:29531200-29533400	Weak transcription	Small Intestine	intestine
8	chr18:29531200-29533600	Weak transcription	Fetal Intestine Small	intestine
9	chr18:29531200-29534200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr18:29531400-29534200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr18:29531400-29536800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr18:29532000-29534400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr18:29532400-29534400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr18:29532600-29533600	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links