Variant report

Variant	rs2050203
Chromosome Location	chr20:24431834-24431835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6114733	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2050203	VSX2	trans	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24425400-24432200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:24426600-24435800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:24427200-24432200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr20:24427400-24436600	Weak transcription	Brain Hippocampus Middle	brain
5	chr20:24429000-24433200	Weak transcription	Gastric	stomach
6	chr20:24429000-24434200	Weak transcription	Dnd41	blood
7	chr20:24429400-24434400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr20:24429600-24432400	Weak transcription	Thymus	Thymus
9	chr20:24429800-24434400	Weak transcription	Fetal Thymus	thymus
10	chr20:24430000-24434200	Weak transcription	Primary T cells from cord blood	blood
11	chr20:24431000-24432200	Weak transcription	Spleen	Spleen
12	chr20:24431200-24432600	Enhancers	Fetal Brain Male	brain
13	chr20:24431800-24432000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr20:24431800-24433200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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