Variant report

Variant	rs2050542
Chromosome Location	chr6:134238640-134238641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133889418..133890706-chr6:134237196..134238666,16	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17063128	0.81[YRI][hapmap]
rs7744608	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134231400-134242000	Weak transcription	Ovary	ovary
2	chr6:134236600-134252800	Weak transcription	Right Atrium	heart
3	chr6:134237200-134240400	Enhancers	A549	lung
4	chr6:134237400-134239200	Enhancers	H9 Cell Line	embryonic stem cell
5	chr6:134237600-134241600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:134237800-134239800	Enhancers	Fetal Stomach	stomach
7	chr6:134238000-134239000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:134238000-134239200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:134238000-134239200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:134238000-134240600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:134238200-134239400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:134238200-134239800	Enhancers	Fetal Lung	lung
13	chr6:134238400-134239000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:134238400-134239000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr6:134238400-134239000	Weak transcription	Fetal Kidney	kidney
16	chr6:134238400-134239200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:134238400-134239200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:134238400-134239200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:134238400-134239200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:134238400-134239400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:134238400-134239400	Weak transcription	Hela-S3	cervix
22	chr6:134238400-134239600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr6:134238400-134239600	Weak transcription	HSMMtube	muscle
24	chr6:134238400-134239800	Weak transcription	GM12878-XiMat	blood
25	chr6:134238400-134241800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:134238400-134245400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:134238600-134238800	Weak transcription	H1 Cell Line	embryonic stem cell

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