Variant report

Variant	rs2051010
Chromosome Location	chr6:144063115-144063116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:144060296..144062270-chr6:144062738..144065749,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1935496	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4140473	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6911389	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6912445	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6927537	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6931865	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9399461	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144022200-144063200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:144022800-144064200	Weak transcription	NH-A	brain
3	chr6:144023800-144063600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:144035000-144063600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:144038200-144063400	Weak transcription	HepG2	liver
6	chr6:144038600-144075400	Weak transcription	NHEK	skin
7	chr6:144042000-144063400	Weak transcription	Lung	lung
8	chr6:144046000-144064200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr6:144046200-144074600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:144047000-144063800	Weak transcription	Fetal Intestine Small	intestine
11	chr6:144047400-144065000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:144047800-144064200	Weak transcription	Fetal Intestine Large	intestine
13	chr6:144048400-144063400	Weak transcription	NHDF-Ad	bronchial
14	chr6:144048400-144063600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr6:144048400-144063800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:144053400-144076600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:144053600-144073600	Weak transcription	Osteobl	bone
18	chr6:144053600-144075400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:144053600-144075600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:144053800-144079800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr6:144055600-144063400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:144055800-144063200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:144056000-144063800	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:144056000-144065600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:144056000-144067600	Weak transcription	K562	blood
26	chr6:144056200-144063400	Weak transcription	Fetal Heart	heart
27	chr6:144056200-144063800	Weak transcription	Fetal Kidney	kidney
28	chr6:144056200-144064800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:144056200-144080200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr6:144056800-144063400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr6:144056800-144063600	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:144056800-144065600	Weak transcription	HUVEC	blood vessel
33	chr6:144057000-144063600	Weak transcription	Fetal Lung	lung
34	chr6:144057400-144064200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr6:144057600-144063400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:144057600-144063400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:144057600-144063400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:144057600-144063800	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:144058000-144063400	Weak transcription	Left Ventricle	heart
40	chr6:144058000-144064400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr6:144058200-144063400	Weak transcription	Psoas Muscle	Psoas
42	chr6:144058800-144063400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:144059200-144064000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr6:144059800-144063600	Weak transcription	Aorta	Aorta
45	chr6:144059800-144077000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:144060000-144066400	Weak transcription	Fetal Brain Female	brain
47	chr6:144060200-144065200	Enhancers	Placenta	Placenta
48	chr6:144060200-144078400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:144060600-144074600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr6:144060800-144074400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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