Variant report

Variant	rs2051615
Chromosome Location	chr6:118467905-118467906
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11153721	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11756835	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12194270	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12203615	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12204646	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12209804	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs129630	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs205955	0.82[ASN][1000 genomes]
rs205957	0.82[ASN][1000 genomes]
rs205959	0.83[ASN][1000 genomes]
rs205961	0.83[ASN][1000 genomes]
rs205962	0.82[ASN][1000 genomes]
rs205966	0.95[CEU][hapmap];0.85[MKK][hapmap];0.94[TSI][hapmap];0.94[EUR][1000 genomes]
rs205968	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs205971	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs205975	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs427474	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4360162	0.81[JPT][hapmap]
rs9320641	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9387558	0.95[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9387559	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9387560	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9401058	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118464600-118469200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:118466200-118468200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:118466200-118469200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:118466400-118468200	Weak transcription	Brain Anterior Caudate	brain
5	chr6:118467200-118468000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:118467200-118468000	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr6:118467200-118469400	Enhancers	Fetal Lung	lung
8	chr6:118467400-118470200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:118467600-118468000	Weak transcription	Fetal Stomach	stomach
10	chr6:118467600-118468200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:118467800-118468600	Enhancers	NH-A	brain

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