Variant report

Variant	rs2051773
Chromosome Location	chr11:17365209-17365210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17364435..17367703-chr11:17371860..17377637,6	K562	blood:

Variant related genes	Relation type
ENSG00000188211	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1073443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12575367	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs214070	0.81[CEU][hapmap]
rs214091	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs214104	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs214105	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2521999	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34452722	0.95[ASN][1000 genomes]
rs55948574	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56213534	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs757081	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8192695	1.00[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2051773	NUCB2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17308200-17372600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:17320800-17372400	Weak transcription	GM12878-XiMat	blood
3	chr11:17334000-17371000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr11:17336200-17372600	Weak transcription	HUVEC	blood vessel
5	chr11:17352400-17365800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:17352600-17365400	Weak transcription	HMEC	breast
7	chr11:17354200-17369200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:17354400-17373000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:17354600-17365600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:17354600-17372400	Weak transcription	Liver	Liver
11	chr11:17355200-17365400	Weak transcription	NH-A	brain
12	chr11:17356000-17365400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:17356000-17367600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:17356000-17371000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr11:17356000-17372200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr11:17356000-17372400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:17356000-17372600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:17356000-17372600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr11:17356000-17372800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr11:17356000-17372800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:17356200-17365400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:17356200-17372400	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr11:17356200-17372400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr11:17356200-17372400	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr11:17356200-17372600	Weak transcription	Adipose Nuclei	Adipose
26	chr11:17356200-17372800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:17356200-17372800	Weak transcription	Aorta	Aorta
28	chr11:17356200-17372800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:17356200-17372800	Weak transcription	Ovary	ovary
30	chr11:17356200-17373000	Weak transcription	Left Ventricle	heart
31	chr11:17356400-17373000	Weak transcription	Esophagus	oesophagus
32	chr11:17359000-17365400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr11:17359000-17372400	Weak transcription	Brain Germinal Matrix	brain
34	chr11:17359200-17372200	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:17360000-17365400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:17360800-17370600	Weak transcription	Thymus	Thymus
37	chr11:17364800-17365400	Enhancers	NHLF	lung
38	chr11:17364800-17365600	Enhancers	Osteobl	bone
39	chr11:17364800-17366000	Enhancers	NHDF-Ad	bronchial
40	chr11:17364800-17366200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:17364800-17368200	Strong transcription	Fetal Thymus	thymus
42	chr11:17364800-17368800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:17364800-17371600	Strong transcription	Dnd41	blood
44	chr11:17365000-17366000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:17365000-17366200	Enhancers	NHEK	skin
46	chr11:17365000-17366600	Strong transcription	Primary T cells from cord blood	blood
47	chr11:17365200-17365600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:17365200-17366000	Enhancers	Muscle Satellite Cultured Cells	--

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