Variant report

Variant	rs2051794
Chromosome Location	chr7:97359857-97359858
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr7:97359720-97359920	MCF10A-Er-Src	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:97359829-97359879	HAEpiC	amniotic membrane:	n/a
2	chr7:97359829-97359879	HRCEpiC	kidney:	n/a
3	chr7:97359829-97359879	LNCaP	prostate:	n/a
4	chr7:97359829-97359879	AG09319	gingival:	n/a
5	chr7:97359829-97359879	HUVEC	blood vessel:	n/a
6	chr7:97359829-97359879	HEK293	kidney:	embryo
7	chr7:97359829-97359879	HCT-116	colon:	n/a
8	chr7:97359829-97359879	HEEpiC	esophagus:	n/a
9	chr7:97359829-97359879	HCPEpiC	choroid plexus:	n/a
10	chr7:97359829-97359879	CMK	blood:	n/a
11	chr7:97359829-97359879	RPTEC	kidney:	n/a
12	chr7:97359829-97359879	U87	brain:	n/a
13	chr7:97359829-97359879	GM19239	blood:	n/a
14	chr7:97359829-97359879	Caco-2	colon:	n/a
15	chr7:97359829-97359879	SK-N-SH	brain:	n/a
16	chr7:97359829-97359879	AG04449	skin:	fetal
17	chr7:97359829-97359879	NB4	blood:	n/a
18	chr7:97359829-97359879	HPAEpiC	pulmonary alveolar:	n/a
19	chr7:97359829-97359879	Hepatocyte	liver:	n/a
20	chr7:97359829-97359879	ECC-1	luminal epithelium:	n/a
21	chr7:97359829-97359879	GM12878	blood:	n/a
22	chr7:97359829-97359879	AoSMC	blood vessel:	n/a
23	chr7:97359829-97359879	MCF-7	breast:	n/a
24	chr7:97359829-97359879	HepG2	liver:	n/a
25	chr7:97359829-97359879	GM12892	blood:	n/a
26	chr7:97359829-97359879	PFSK-1	brain:	n/a
27	chr7:97359829-97359879	BE2_C	brain:	n/a
28	chr7:97359829-97359879	SK-N-MC	brain:	n/a
29	chr7:97359829-97359879	ProgFib	skin:	n/a
30	chr7:97359829-97359879	IMR90	lung:	fetal
31	chr7:97359829-97359879	PrEC	prostate:	n/a
32	chr7:97359829-97359879	HRE	kidney:	n/a
33	chr7:97359829-97359879	GM06990	blood:	n/a
34	chr7:97359829-97359879	HCF	heart:	n/a
35	chr7:97359829-97359879	BJ	skin:	n/a
36	chr7:97359829-97359879	AG09309	skin:	n/a
37	chr7:97359829-97359879	AG10803	skin:	n/a
38	chr7:97359829-97359879	NT2-D1	testis:	n/a
39	chr7:97359829-97359879	HRPEpiC	eye:	n/a
40	chr7:97359829-97359879	K562	blood:	n/a
41	chr7:97359829-97359879	PANC-1	pancreas:	n/a
42	chr7:97359829-97359879	NHDF-neo	bronchial:	n/a
43	chr7:97359829-97359879	Jurkat	blood:	n/a
44	chr7:97359829-97359879	SAEC	small airway:	n/a
45	chr7:97359829-97359879	A549	lung:	n/a
46	chr7:97359829-97359879	HMEC	breast:	n/a
47	chr7:97359829-97359879	GM12891	blood:	n/a
48	chr7:97359829-97359879	NHBE	bronchial:	n/a
49	chr7:97359829-97359879	AG04450	lung:	fetal
50	chr7:97359829-97359879	SKMC	muscle:	n/a

No data

Variant related genes	Relation type
TAC1	TF binding region
TAC1	CpG island

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6971427	0.86[ASW][hapmap];0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3359061	chr7:96997047-97402692	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv888757	chr7:97003503-97461115	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1027086	chr7:97076283-97404597	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv888759	chr7:97283118-97422195	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1031371	chr7:97312452-98070538	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:97359600-97360000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell

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