Variant report

Variant	rs2052244
Chromosome Location	chr7:78124697-78124698
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2110630	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2192649	0.93[ASN][1000 genomes]
rs35114939	0.95[ASN][1000 genomes]
rs4421288	0.95[ASN][1000 genomes]
rs4730332	0.93[ASN][1000 genomes]
rs4730342	0.81[EUR][1000 genomes]
rs4730343	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs724914	0.80[EUR][1000 genomes]
rs7782195	0.86[EUR][1000 genomes]
rs7787798	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7790347	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7805441	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78114800-78127800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:78116600-78125600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:78119400-78125200	Weak transcription	Fetal Brain Female	brain
4	chr7:78119400-78125800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:78119400-78128000	Enhancers	Brain Substantia Nigra	brain
6	chr7:78119400-78130200	Weak transcription	Aorta	Aorta
7	chr7:78119600-78145600	Weak transcription	Ovary	ovary
8	chr7:78119800-78128400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:78119800-78132400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:78120800-78125000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr7:78121800-78125800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:78122000-78127400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:78122000-78130400	Weak transcription	Brain Germinal Matrix	brain
14	chr7:78122200-78125600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:78122400-78125800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr7:78122600-78125600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:78122600-78143800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:78122800-78125400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:78123000-78125400	Enhancers	Brain Anterior Caudate	brain
20	chr7:78123000-78125800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:78123000-78126600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr7:78123200-78125400	Weak transcription	Brain Angular Gyrus	brain
23	chr7:78123400-78125400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr7:78123600-78125400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr7:78124000-78124800	Weak transcription	Brain Hippocampus Middle	brain

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