Variant report

Variant	rs2052514
Chromosome Location	chr5:164619479-164619480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10067676	0.93[ASN][1000 genomes]
rs10068870	0.85[ASN][1000 genomes]
rs10076780	0.93[ASN][1000 genomes]
rs10076821	0.93[ASN][1000 genomes]
rs10866752	0.92[CEU][hapmap];0.93[JPT][hapmap]
rs11135357	0.80[AFR][1000 genomes]
rs11135358	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11135360	0.82[AFR][1000 genomes]
rs11747437	0.93[ASN][1000 genomes]
rs11747503	0.93[ASN][1000 genomes]
rs11748440	0.90[ASN][1000 genomes]
rs11748996	0.93[ASN][1000 genomes]
rs11749187	0.93[ASN][1000 genomes]
rs12519113	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12519127	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13159284	0.85[ASN][1000 genomes]
rs13178865	0.85[ASN][1000 genomes]
rs13181477	0.85[ASN][1000 genomes]
rs13186057	0.93[ASN][1000 genomes]
rs1363117	0.84[AFR][1000 genomes]
rs1469062	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17333449	0.84[ASN][1000 genomes]
rs17391889	0.93[ASN][1000 genomes]
rs1833718	0.85[ASN][1000 genomes]
rs1895292	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2052513	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs253537	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs253544	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3095951	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35203349	0.90[ASN][1000 genomes]
rs4291037	0.91[ASN][1000 genomes]
rs4868753	0.93[ASN][1000 genomes]
rs4868918	0.90[ASN][1000 genomes]
rs4868919	0.90[ASN][1000 genomes]
rs4868920	0.90[ASN][1000 genomes]
rs62385686	0.93[ASN][1000 genomes]
rs6896863	0.88[ASN][1000 genomes]
rs7715290	0.93[ASN][1000 genomes]
rs7720784	0.93[ASN][1000 genomes]
rs7731911	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995060	chr5:163660200-164620500	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv528624	chr5:164319435-164701201	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1033866	chr5:164419608-164677758	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1027138	chr5:164563093-164852655	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv537937	chr5:164563093-164852655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1028006	chr5:164563293-164852516	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv537938	chr5:164563293-164852516	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1027103	chr5:164606534-164694498	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:164618000-164619800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr5:164618000-164619800	Weak transcription	Monocytes-CD14+_RO01746	blood

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