Variant report

Variant	rs2056636
Chromosome Location	chr2:7382963-7382964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11676052	0.82[ASN][1000 genomes]
rs1525495	0.85[ASN][1000 genomes]
rs1608835	0.89[ASN][1000 genomes]
rs1980339	0.83[ASN][1000 genomes]
rs2222611	0.83[ASN][1000 genomes]
rs4669168	0.83[ASN][1000 genomes]
rs7576780	0.80[AFR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7586851	0.81[ASN][1000 genomes]
rs876997	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833337	chr2:7337273-7521146	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7372000-7388400	Weak transcription	Pancreas	Pancrea
2	chr2:7378000-7388400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:7381600-7387000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr2:7381800-7383800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr2:7382200-7383200	Enhancers	Spleen	Spleen
6	chr2:7382200-7383400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr2:7382400-7383200	Enhancers	GM12878-XiMat	blood
8	chr2:7382600-7383000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:7382600-7385600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:7382800-7383200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr2:7382800-7384200	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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