Variant report

Variant	rs2058443
Chromosome Location	chr7:122285358-122285359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2058442	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2192017	0.82[EUR][1000 genomes]
rs2254981	0.86[EUR][1000 genomes]
rs2430016	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2430017	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2430018	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2430020	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2430021	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2430022	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2430024	0.82[EUR][1000 genomes]
rs2430053	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2471198	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2471199	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2471203	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2471204	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2471207	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2471211	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2471214	0.82[EUR][1000 genomes]
rs4285412	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv3346852	chr7:122284241-122287089	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3364968	chr7:122284516-122286864	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122269800-122288000	Weak transcription	HepG2	liver
2	chr7:122278600-122288200	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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