Variant report

Variant	rs2058852
Chromosome Location	chr19:38164602-38164603
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56077756	0.98[ASN][1000 genomes]
rs62108291	0.93[ASN][1000 genomes]
rs62108306	0.96[ASN][1000 genomes]
rs7259272	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs2058852	AC012309.5	cis	Artery Tibial	GTEx
rs2058852	HKR1	cis	Whole Blood	GTEx
rs2058852	AC012309.5	cis	Thyroid	GTEx
rs2058852	AC012309.5	cis	Esophagus Muscularis	GTEx
rs2058852	AC012309.5	cis	Esophagus Mucosa	GTEx
rs2058852	AC012309.5	cis	Heart Left Ventricle	GTEx
rs2058852	ZNF781	cis	Thyroid	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38152000-38169000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:38156600-38165200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:38156600-38165200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:38159200-38165200	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr19:38164000-38165000	ZNF genes & repeats	Left Ventricle	heart
6	chr19:38164400-38165000	ZNF genes & repeats	Brain Angular Gyrus	brain
7	chr19:38164400-38165000	ZNF genes & repeats	Ovary	ovary
8	chr19:38164400-38165200	ZNF genes & repeats	Brain Hippocampus Middle	brain
9	chr19:38164600-38165000	ZNF genes & repeats	Psoas Muscle	Psoas
10	chr19:38164600-38165000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
11	chr19:38164600-38165200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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