Variant report
| Variant | rs2059274 |
|---|---|
| Chromosome Location | chr16:71348511-71348512 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:71347498..71350469-chr16:71383998..71385820,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs109556 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11865544 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1345890 | 0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1424138 | 0.89[ASN][1000 genomes] |
| rs1424139 | 0.89[ASN][1000 genomes] |
| rs1465463 | 0.88[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs171013 | 0.83[EUR][1000 genomes] |
| rs182910 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2161711 | 0.88[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs235996 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs235999 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs236006 | 0.83[EUR][1000 genomes] |
| rs3094452 | 0.84[AMR][1000 genomes] |
| rs3096379 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs3096381 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4570853 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4788790 | 1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4788793 | 0.95[ASN][1000 genomes] |
| rs62055863 | 0.82[EUR][1000 genomes] |
| rs918754 | 1.00[ASN][1000 genomes] |
| rs918756 | 1.00[ASN][1000 genomes] |
| rs918757 | 0.95[ASN][1000 genomes] |
| rs960177 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949461 | chr16:71196153-71579711 | ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv482374 | chr16:71228600-71401617 | Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv1062426 | chr16:71307180-71423400 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv528229 | chr16:71331728-71358937 | Enhancers Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:71348200-71348600 | Enhancers | HepG2 | liver |
