Variant report

Variant	rs205952
Chromosome Location	chr6:118487445-118487446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs172239	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs205944	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs205945	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs205946	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs205948	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs205949	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv428153	chr6:118430517-118586974	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1030089	chr6:118436482-118604516	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538427	chr6:118436482-118604516	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118485200-118489000	Weak transcription	Brain Germinal Matrix	brain
2	chr6:118486000-118492200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:118486200-118492200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:118486400-118494600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:118486400-118494600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:118487400-118487600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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