Variant report

Variant	rs2060589
Chromosome Location	chr4:86926745-86926746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:86926223-86927254	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
ENSG00000273389	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17011217	0.88[JPT][hapmap];1.00[EUR][1000 genomes]
rs17011232	1.00[EUR][1000 genomes]
rs72976253	1.00[EUR][1000 genomes]
rs72976257	1.00[EUR][1000 genomes]
rs72976258	1.00[EUR][1000 genomes]
rs72976268	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86889400-86935000	Weak transcription	Psoas Muscle	Psoas
2	chr4:86899200-86927000	Weak transcription	Lung	lung
3	chr4:86916800-86929400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:86916800-86935800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:86916800-86985400	Weak transcription	Ovary	ovary
6	chr4:86917000-86929000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:86917000-86931800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:86917000-86931800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:86917000-86931800	Weak transcription	Osteobl	bone
10	chr4:86917000-86932000	Weak transcription	NHLF	lung
11	chr4:86917000-86932400	Weak transcription	Fetal Lung	lung
12	chr4:86917000-86932400	Weak transcription	Right Ventricle	heart
13	chr4:86917000-86933800	Weak transcription	Gastric	stomach
14	chr4:86917000-86933800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:86917000-86935200	Weak transcription	Left Ventricle	heart
16	chr4:86917000-86935800	Weak transcription	Spleen	Spleen
17	chr4:86917000-86954000	Weak transcription	Pancreas	Pancrea
18	chr4:86917200-86932000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:86917400-86926800	Weak transcription	Fetal Stomach	stomach
20	chr4:86917400-86940400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr4:86917800-86931600	Weak transcription	NHDF-Ad	bronchial
22	chr4:86918000-86931800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:86919400-86941200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:86920200-86933800	Weak transcription	Aorta	Aorta
25	chr4:86920800-86928600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:86921200-86928400	Strong transcription	HUVEC	blood vessel
27	chr4:86921800-86932200	Weak transcription	Fetal Heart	heart
28	chr4:86922000-86927200	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr4:86922800-86935200	Weak transcription	Right Atrium	heart
30	chr4:86923400-86931800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:86924200-86928600	Strong transcription	Fetal Muscle Leg	muscle
32	chr4:86924600-86927400	Strong transcription	Primary B cells from cord blood	blood
33	chr4:86925400-86937200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr4:86925600-86931800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:86925600-86932400	Weak transcription	HSMM	muscle
36	chr4:86925600-86935000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:86925600-86935200	Weak transcription	Adipose Nuclei	Adipose
38	chr4:86925600-86935600	Weak transcription	Primary B cells from peripheral blood	blood
39	chr4:86925600-86937400	Weak transcription	Fetal Kidney	kidney
40	chr4:86925800-86926800	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr4:86926400-86928600	Strong transcription	Fetal Muscle Trunk	muscle
42	chr4:86926600-86928200	Strong transcription	HSMMtube	muscle

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