Variant report

Variant	rs2060975
Chromosome Location	chr18:13381888-13381889
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1026330	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8096336	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13370000-13382200	Enhancers	Fetal Brain Male	brain
2	chr18:13373000-13388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr18:13374400-13383800	Enhancers	Left Ventricle	heart
4	chr18:13375200-13382600	Weak transcription	Gastric	stomach
5	chr18:13375400-13382000	Enhancers	Brain Hippocampus Middle	brain
6	chr18:13375600-13382200	Enhancers	Fetal Brain Female	brain
7	chr18:13375800-13383600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr18:13376000-13382400	Weak transcription	Small Intestine	intestine
9	chr18:13377200-13382600	Weak transcription	Liver	Liver
10	chr18:13377800-13383000	Genic enhancers	Fetal Thymus	thymus
11	chr18:13377800-13383400	Enhancers	Fetal Heart	heart
12	chr18:13378000-13382000	Weak transcription	Dnd41	blood
13	chr18:13379000-13383800	Enhancers	Right Ventricle	heart
14	chr18:13379600-13382200	Enhancers	Fetal Lung	lung
15	chr18:13379800-13393600	Weak transcription	HepG2	liver
16	chr18:13380000-13382000	Enhancers	HUVEC	blood vessel
17	chr18:13380200-13382000	Enhancers	NH-A	brain
18	chr18:13380200-13382600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr18:13380200-13383600	Enhancers	Esophagus	oesophagus
20	chr18:13380400-13382800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr18:13380400-13383600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr18:13380400-13390200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr18:13380800-13382000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr18:13381000-13383600	Enhancers	Lung	lung
25	chr18:13381200-13382000	Enhancers	Aorta	Aorta
26	chr18:13381200-13382600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr18:13381400-13382000	Enhancers	Spleen	Spleen
28	chr18:13381400-13383000	Enhancers	Brain Germinal Matrix	brain
29	chr18:13381400-13384000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
30	chr18:13381400-13384200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
31	chr18:13381600-13382000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr18:13381600-13382000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
33	chr18:13381600-13382000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
34	chr18:13381600-13382000	Flanking Active TSS	Duodenum Mucosa	Duodenum
35	chr18:13381600-13382000	Enhancers	Fetal Kidney	kidney
36	chr18:13381600-13382000	Flanking Active TSS	Rectal Smooth Muscle	rectum
37	chr18:13381600-13382000	Flanking Active TSS	HSMMtube	muscle
38	chr18:13381600-13382200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
39	chr18:13381600-13382400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
40	chr18:13381600-13382400	Flanking Active TSS	Primary B cells from peripheral blood	blood
41	chr18:13381600-13382400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr18:13381600-13382600	Flanking Active TSS	Primary B cells from cord blood	blood
43	chr18:13381600-13382600	Active TSS	Colonic Mucosa	Colon
44	chr18:13381600-13382800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr18:13381600-13382800	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr18:13381600-13382800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
47	chr18:13381600-13383200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
48	chr18:13381600-13383400	Enhancers	Fetal Stomach	stomach
49	chr18:13381600-13383600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr18:13381600-13383600	Flanking Active TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links