Variant report

Variant	rs2062882
Chromosome Location	chr8:91839576-91839577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91834090..91836041-chr8:91836848..91839680,3	MCF-7	breast:
2	chr8:91839384..91841542-chr8:91868358..91870076,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10108616	0.85[ASW][hapmap];0.94[YRI][hapmap]
rs10808633	0.92[JPT][hapmap]
rs10956784	0.94[YRI][hapmap]
rs1125229	0.85[ASW][hapmap];0.94[YRI][hapmap]
rs11994970	0.92[ASN][1000 genomes]
rs12542103	0.94[YRI][hapmap]
rs12679013	0.83[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.94[ASN][1000 genomes]
rs13264873	0.94[YRI][hapmap]
rs1354519	0.85[ASW][hapmap];0.81[LWK][hapmap];0.94[YRI][hapmap]
rs1354520	0.85[ASW][hapmap];0.94[YRI][hapmap]
rs1386107	0.85[ASW][hapmap];0.94[YRI][hapmap]
rs1386108	0.94[YRI][hapmap]
rs1386109	0.94[YRI][hapmap]
rs1394501	0.83[YRI][hapmap]
rs1486468	0.86[CHB][hapmap]
rs1504787	0.94[YRI][hapmap]
rs1504795	0.85[ASW][hapmap];0.94[YRI][hapmap]
rs1504796	0.94[YRI][hapmap]
rs2221423	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs2740789	0.88[JPT][hapmap]
rs4236840	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6471254	0.84[CHB][hapmap];0.95[CHD][hapmap];0.82[MEX][hapmap]
rs6471257	0.94[YRI][hapmap]
rs6471259	0.94[YRI][hapmap]
rs6993462	0.83[YRI][hapmap]
rs7002288	0.84[CHB][hapmap]
rs7012165	0.92[CHB][hapmap];0.91[CHD][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap];0.94[ASN][1000 genomes]
rs7017683	0.88[JPT][hapmap];0.91[MEX][hapmap]
rs7824149	0.85[ASW][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7825213	0.83[CHB][hapmap]
rs7841474	0.84[CHB][hapmap]
rs7844134	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs937738	0.94[YRI][hapmap]
rs937739	0.94[YRI][hapmap]
rs9969519	0.94[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1034104	chr8:91723213-91847147	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv539673	chr8:91723213-91847147	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3389773	chr8:91824825-91840602	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91832000-91849400	Weak transcription	Brain Angular Gyrus	brain
2	chr8:91832400-91843400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr8:91835400-91847400	Weak transcription	Brain Anterior Caudate	brain
4	chr8:91838000-91839800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:91838000-91841800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:91838000-91841800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr8:91838000-91842000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:91838000-91842200	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr8:91838200-91839800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr8:91838400-91839800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr8:91838600-91843200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr8:91838800-91840600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr8:91839200-91839600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr8:91839400-91840800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:91839400-91841800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr8:91839400-91841800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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