Variant report

Variant	rs2063345
Chromosome Location	chr6:160860154-160860155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:160847266..160849936-chr6:160858679..160861439,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1018234	0.95[CEU][hapmap];0.83[TSI][hapmap];0.89[EUR][1000 genomes]
rs1510225	0.83[ASW][hapmap];0.95[CEU][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1510229	0.91[ASW][hapmap];0.95[CEU][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1567438	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1567442	0.95[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1605965	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1801693	0.82[CEU][hapmap];0.83[TSI][hapmap]
rs2136675	0.86[CEU][hapmap];0.91[GIH][hapmap];0.87[TSI][hapmap];0.81[YRI][hapmap]
rs2174914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2175251	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2457550	0.89[CEU][hapmap];0.87[YRI][hapmap]
rs2457569	0.87[CEU][hapmap]
rs2457575	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2457576	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2504937	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2661834	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2665358	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs316244	0.91[ASW][hapmap];0.95[CEU][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs376563	0.82[CHB][hapmap];0.80[CHD][hapmap];0.91[JPT][hapmap]
rs377551	0.87[CEU][hapmap]
rs394352	0.91[ASW][hapmap];0.91[CEU][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs394468	0.87[CEU][hapmap]
rs394487	0.87[CEU][hapmap];0.80[EUR][1000 genomes]
rs402219	0.95[CEU][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs405405	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs420038	0.91[ASW][hapmap];0.95[CEU][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs432919	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs440134	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs440962	0.91[ASW][hapmap];0.95[CEU][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs443043	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs446926	0.95[CEU][hapmap];0.83[TSI][hapmap];0.90[EUR][1000 genomes]
rs4709441	0.86[CEU][hapmap]
rs569919	0.81[YRI][hapmap]
rs7774579	0.82[CEU][hapmap];0.93[GIH][hapmap]
rs9365168	0.87[CEU][hapmap];0.93[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv35098	chr6:160422589-161070870	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv2757197	chr6:160432331-161070870	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv818463	chr6:160435569-161025547	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1030746	chr6:160592321-160867031	Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv538493	chr6:160592321-160867031	Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1030171	chr6:160648469-161091864	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv886809	chr6:160670494-160979275	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
10	nsv886810	chr6:160700769-160897872	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv886811	chr6:160700769-161070990	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
12	nsv886812	chr6:160706661-161024848	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
13	nsv1020357	chr6:160849895-160883394	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160818600-160876800	Weak transcription	Esophagus	oesophagus
2	chr6:160849400-160866200	Weak transcription	Lung	lung
3	chr6:160851000-160860800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:160852600-160876800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:160853000-160860200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:160853400-160865400	Weak transcription	Psoas Muscle	Psoas
7	chr6:160853600-160875200	Weak transcription	Ovary	ovary
8	chr6:160854600-160862200	Weak transcription	A549	lung
9	chr6:160859000-160860200	Enhancers	Stomach Smooth Muscle	stomach
10	chr6:160859200-160866000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:160859200-160876000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:160859400-160860800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:160859400-160863200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:160859400-160863400	Weak transcription	Pancreas	Pancrea
15	chr6:160859400-160864200	Weak transcription	HepG2	liver
16	chr6:160859400-160866200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:160859600-160865800	Weak transcription	Liver	Liver
18	chr6:160860000-160860600	Enhancers	Fetal Brain Female	brain
19	chr6:160860000-160862200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links