Variant report

Variant	rs2063346
Chromosome Location	chr6:160884275-160884276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10455782	0.90[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs1510230	1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs1810126	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2048327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2063347	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2076828	1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs2292334	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2457566	0.95[ASN][1000 genomes]
rs2457574	1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs2504926	1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs2504927	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs2661839	0.81[EUR][1000 genomes]
rs3088442	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3106162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106164	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs3123636	0.87[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs388170	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs3918285	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3918286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7758229	0.87[CEU][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs7769879	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9355288	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9365164	0.95[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv35098	chr6:160422589-161070870	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv2757197	chr6:160432331-161070870	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv818463	chr6:160435569-161025547	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1030171	chr6:160648469-161091864	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv886809	chr6:160670494-160979275	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv886810	chr6:160700769-160897872	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv886811	chr6:160700769-161070990	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv886812	chr6:160706661-161024848	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
11	esv6519	chr6:160877633-160956593	Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv886813	chr6:160877640-160940120	Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	esv3378121	chr6:160877757-160956624	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv3475083	chr6:160877837-160956581	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	esv3475084	chr6:160877837-160956581	Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160878200-160885000	Enhancers	Primary B cells from peripheral blood	blood
2	chr6:160878600-160884400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:160881400-160884600	Enhancers	Primary hematopoietic stem cells	blood
4	chr6:160882000-160884600	Enhancers	Primary B cells from cord blood	blood
5	chr6:160882200-160884800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:160882400-160884400	Flanking Active TSS	Primary T cells from cord blood	blood
7	chr6:160882400-160884600	Enhancers	HSMM	muscle
8	chr6:160882400-160885400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:160882600-160884400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:160882600-160884400	Enhancers	HMEC	breast
11	chr6:160882600-160884400	Enhancers	NHDF-Ad	bronchial
12	chr6:160882600-160884400	Enhancers	NHEK	skin
13	chr6:160882600-160884600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr6:160882800-160884400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:160882800-160884400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:160882800-160884400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:160882800-160884400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:160882800-160884400	Enhancers	Thymus	Thymus
19	chr6:160882800-160884600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:160883000-160884600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr6:160883400-160884600	Flanking Active TSS	GM12878-XiMat	blood
22	chr6:160883400-160887000	Weak transcription	Liver	Liver
23	chr6:160883800-160884400	Enhancers	Spleen	Spleen
24	chr6:160883800-160884400	Flanking Active TSS	Dnd41	blood
25	chr6:160883800-160884600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
26	chr6:160883800-160884600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
27	chr6:160883800-160884600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:160883800-160884800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr6:160884000-160884400	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr6:160884000-160884600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:160884000-160884800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:160884000-160884800	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr6:160884000-160885000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:160884000-160885600	Enhancers	Primary T cells fromperipheralblood	blood
35	chr6:160884000-160886600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr6:160884200-160884400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr6:160884200-160884400	Bivalent Enhancer	Fetal Thymus	thymus
38	chr6:160884200-160885600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr6:160884200-160885800	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr6:160884200-160885800	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr6:160884200-160886200	Enhancers	Primary T helper cells fromperipheralblood	blood
42	chr6:160884200-160886200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr6:160884200-160886200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
44	chr6:160884200-160886400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr6:160884200-160904800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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