Variant report

Variant	rs2064813
Chromosome Location	chr2:32212935-32212936
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:32210208..32213123-chr2:32231743..32234482,2	K562	blood:
2	chr2:32210903..32213445-chr2:32225242..32227555,2	MCF-7	breast:
3	chr2:32208830..32211758-chr2:32212681..32214401,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13013695	0.84[CEU][hapmap]
rs4952203	0.84[ASW][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2064813	SLC30A6	cis	parietal	SCAN
rs2064813	SLC30A6	cis	cerebellum	SCAN

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32168400-32233400	Weak transcription	Fetal Stomach	stomach
2	chr2:32171000-32227600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:32191600-32234200	Weak transcription	Lung	lung
4	chr2:32202400-32233600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr2:32203800-32223000	Weak transcription	Spleen	Spleen
6	chr2:32205600-32217600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:32206000-32221200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr2:32206000-32223000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr2:32206400-32214800	Weak transcription	Thymus	Thymus
10	chr2:32206400-32218200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr2:32206400-32221200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr2:32206400-32222400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr2:32206400-32232200	Weak transcription	Fetal Lung	lung
14	chr2:32206400-32233200	Weak transcription	Fetal Muscle Leg	muscle
15	chr2:32206600-32213000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:32206600-32216800	Weak transcription	Hela-S3	cervix
17	chr2:32206600-32218000	Weak transcription	Primary T cells from cord blood	blood
18	chr2:32206600-32218000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr2:32206600-32218600	Weak transcription	Primary B cells from peripheral blood	blood
20	chr2:32206600-32234000	Weak transcription	Stomach Mucosa	stomach
21	chr2:32206800-32214400	Weak transcription	Liver	Liver
22	chr2:32206800-32218400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr2:32206800-32222600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr2:32206800-32222600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr2:32206800-32223600	Weak transcription	Primary B cells from cord blood	blood
26	chr2:32206800-32230800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr2:32207000-32217400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr2:32207000-32218400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr2:32207000-32222600	Weak transcription	K562	blood
30	chr2:32207000-32223000	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr2:32207200-32218000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr2:32208000-32225800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr2:32209600-32214800	Weak transcription	GM12878-XiMat	blood
34	chr2:32209600-32221800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr2:32209600-32223000	Weak transcription	Fetal Thymus	thymus
36	chr2:32209600-32225600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr2:32209800-32213400	Weak transcription	Gastric	stomach
38	chr2:32209800-32214000	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr2:32209800-32217000	Weak transcription	Fetal Intestine Large	intestine
40	chr2:32210000-32222600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr2:32211000-32232800	Weak transcription	Fetal Intestine Small	intestine
42	chr2:32211200-32213400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr2:32211400-32213200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr2:32211600-32215000	Enhancers	A549	lung
45	chr2:32211800-32213200	Enhancers	HepG2	liver
46	chr2:32211800-32213400	Enhancers	Fetal Heart	heart
47	chr2:32212000-32213000	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr2:32212000-32213200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr2:32212000-32213200	Enhancers	Muscle Satellite Cultured Cells	--
50	chr2:32212000-32213200	Enhancers	Skeletal Muscle Male	skeletal muscle

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